Biopython: Tutorial and Cookbook



Download free course Biopython: Tutorial and Cookbook, pdf file on 360 pages by by Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek Wilczy?ski.
The Biopython Project is an international association of developers tools for computational molecular biology. Python is an object oriented, interpreted,flexible language that is becoming increasingly popular for scientific computing. Python is easy to learn, hasa very clear syntax and can easily be extended with modules written in C, C++ or FORTRAN.

Thegoal of Biopython is to make it as easy as possible to use Python for bioinformatics by creating high-quality, reusable modules and classes.

Biopython features include parsers for various Bioinformatics file formats (BLAST, Clustalw, FASTA, Genbank,...), access to online services (NCBI, Expasy,...), interfaces to commonand not-so-common programs (Clustalw, DSSP, MSMS...), a standard sequence class, various clusteringmodules, a KD tree data structure etc.

Table of contents

  • Introduction
  • Quick Start - What can you do with Biopython?
  • Sequence objects
  • Sequence annotation objects
  • Sequence Input/Output
  • Multiple Sequence Alignment objects
  • BLAST
  • BLAST and other sequence search tools
  • Accessing NCBI's Entrez databases
  • Swiss-Prot and ExPASy
  • Going 3D: The PDB module
  • Bio.PopGen: Population genetics
  • Phylogenetics with Bio.Phylo
  • Sequence motif analysis using Bio.motifs
  • Cluster analysis
  • Supervised learning methods
  • Graphics including GenomeDiagram
  • KEGG
  • Bio.phenotype: analyse phenotypic data
  • Cookbook - Cool things to do with it
  • The Biopython testing framework
  • Advanced
  • Where to go from here - contributing to Biopython
Pages : 360
Size : 3.0 MB
File type : PDF
Downloads: 148
Created: 2022-02-01
License: Open Publication License
Author(s): by Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek Wilczy?ski
Biopython: Tutorial and Cookbook

Warning: Trying to access array offset on false in /home/tutovnfz/public_html/article.php on line 233

Others python Tutorials

Practices of the Python Pro

IPython Interactive Computing and Visualization Cookbook

Python For Loop free PDF

Non-Programmer's Tutorial for Python 3

Python for You and Me

Others related eBooks about Biopython: Tutorial and Cookbook

Designing Scalable JavaScript Applications

Download free course Designing Scalable JavaScript Applications, pdf file on 134 pages by Emmit Scott....

Learning Ruby on Rails

Download free course Learning Ruby on Rails, pdf file on 291 pages by Stack Overflow Community....

Java self learning

Download free Java tutorial for self learning , course tutorial training on pdf under 115 pages by Laura Lemay and Charles L. Perkins....

Introduction to C and GUI Programming

The popular C programming language is used for a huge range of applications, from the tiny microcontrollers used in toasters and watches up to complete operating systems....

Think Java, 2nd Edition

Think Java is a hands-on introduction to computer science and programming used by many uni..., download free Java tutorial in PDF (326 pages) created by ....

Agile Processes, in Software Engineering, and Extreme Programming

Download free course Agile Processes, in Software Engineering, and Extreme Programming, pdf file on 343 pages by by Helen Sharp, Tracy Hall....

Introduction to Csharp

Download free tutorial in PDF of C# (Csharp) , it's a training document under 65 pages for students who want to learn about the basics of CSharp programming language....

Programming in Fortran 95

Download Fortran 95 course, PDF tutorial for beginners to learn the basics of Fortran programming language....

TouchDevelop - Programming on the Go

Mobile devices such as smartphones and tablets are set to become the main computersthat virtually all people will own and carry with them at all times. And yet,mobile devices are not yet used for all computing tasks. A project at MicrosoftResearch was created to answer a simple question: It is possi...

How To Make Video Games

Learn How To Make Video Games, This ebook shows you everything you need to know to make video games....