Biopython: Tutorial and Cookbook



Download free course Biopython: Tutorial and Cookbook, pdf file on 360 pages by by Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek Wilczy?ski.
The Biopython Project is an international association of developers tools for computational molecular biology. Python is an object oriented, interpreted,flexible language that is becoming increasingly popular for scientific computing. Python is easy to learn, hasa very clear syntax and can easily be extended with modules written in C, C++ or FORTRAN.

Thegoal of Biopython is to make it as easy as possible to use Python for bioinformatics by creating high-quality, reusable modules and classes.

Biopython features include parsers for various Bioinformatics file formats (BLAST, Clustalw, FASTA, Genbank,...), access to online services (NCBI, Expasy,...), interfaces to commonand not-so-common programs (Clustalw, DSSP, MSMS...), a standard sequence class, various clusteringmodules, a KD tree data structure etc.

Table of contents

  • Introduction
  • Quick Start - What can you do with Biopython?
  • Sequence objects
  • Sequence annotation objects
  • Sequence Input/Output
  • Multiple Sequence Alignment objects
  • BLAST
  • BLAST and other sequence search tools
  • Accessing NCBI's Entrez databases
  • Swiss-Prot and ExPASy
  • Going 3D: The PDB module
  • Bio.PopGen: Population genetics
  • Phylogenetics with Bio.Phylo
  • Sequence motif analysis using Bio.motifs
  • Cluster analysis
  • Supervised learning methods
  • Graphics including GenomeDiagram
  • KEGG
  • Bio.phenotype: analyse phenotypic data
  • Cookbook - Cool things to do with it
  • The Biopython testing framework
  • Advanced
  • Where to go from here - contributing to Biopython
Pages : 360
Size : 3.0 MB
File type : PDF
Downloads: 85
Created: 2022-02-01
License: Open Publication License
Author(s): by Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek Wilczy?ski
Biopython: Tutorial and Cookbook

Others python Tutorials

A Practical Introduction to Python Programming

Practices of the Python Pro

The Coder's Apprentice: Learning Programming with Python 3

Building Skills in Python: A Programmer's Introduction to Python

Python Scripting for Spatial Data Processing

Others related eBooks about Biopython: Tutorial and Cookbook

2D Game Development: From Zero to Hero

This is a small project that aims to gather some knowledge about game development and make..., download free Game Development tutorial in PDF (260 pages) created by Penaz ....

Download Scrum Guide in PDF

Course pdf Training, overview of agile project management with Scrum...

Android Programming Basics

Start learning development mobile with this tutorial ,it's an easy trainig document in PDF the about of Android Programming ,free courses under 22 pages for beginners....

Artificial Neural Networks

Artificial Neural Networks (ANN) are state-of-the-art, trainable algorithms that emulate certain major aspects in the functioning of the human brain. This gives them a unique, self-training ability, the ability to formalize unclassified information and, most importantly, the ability to make foreca...

Java Succinctly Part 2

Download free course Java Succinctly Part 2, pdf file on 134 pages by Christopher Rose....

Getting started with Raspberry PI

Getting started with Raspberry Pi, lessons and examples to download for free in PDF format, tutorial created by StackOverflow....

Getting started with Sharepoint

Download free Sharepoint tutorial course in PDF, training file in 10 chapters and 75 pages. Free unaffiliated ebook created from Stack OverFlow contributor....

Modeling and Simulation in Python

Modeling and Simulation in Python is an introduction to physical modeling using a computat..., download free Python tutorial in PDF (245 pages) created by ....

Guide to C++ Programming

This tutorial provides an introduction to C++ programming language in PDF. This guide will help you to learn how to write a simple computer programs in C++ with somes exercises....

A Byte of Python

Python is one of those rare languages which can claim to be both simple and powerful. You ..., download free Python tutorial in PDF (117 pages) created by Swaroop C H ....